New publication: BMC Genomics

Schmeier Research Group // Massey University

PUBLICATION, · TUBERCULOSIS, · ENHANCERS, · NCRNAS

“Transcriptionally induced enhancers in the macrophage immune response to Mycobacterium tuberculosis infection.” has been published in BMC Genomics.

Highlights

  • Transcribed enhancer landscape in macrophages infected with Mycobacterium tuberculosis.
  • We identified in particular a set of enhancers that establish new transcriptional activity upon infection
  • These enhancers are highly specific to not only the tissue but also the process.

Publications // latest

MinION Sequencing of colorectal cancer tumour microbiomes – a comparison with amplicon-based and RNA-Sequencing. PLoS One, 2020, accepted.

Molecular subtyping improves prognostication of Stage 2 colorectal cancer. BMC Cancer, 2019, 19, 1155

DeePEL: Deep learning architecture to recognize p-lncRNA and e-lncRNA promoters. In proceedings: IEEE International Conference on Bioinformatics and Biomedicine, 2019, B516, accepted.

News&Blog // latest

[ 20190528 | news ] Recent funding successes.

[ 20190319 | news ] New publication: Frontiers in Immonology

[ 20190122 | news ] New publication: BMC Genomics

[ 20181230 | news ] New publication: Molecular Phylogenetics and Evolution

[ 20180703 | news ] New publication: Nature Methods

Workshops // upcoming

[ End 2019 ] Workshop: Towards Reproducible Computational Biology, Massey University Auckland

[ End 2019 ] Software Carpentry Workshop, Massey University Auckland

Tweets // latest